One year has passed since Jak and Daxter saved Haven City from Kor and the attacking Metal Heads, yet Haven City is still immersed in deadly chaos as three groups fight for control of the streets. The people of Haven City have grown to distrust Jak's dark powers, and as rumours boil of Jak's ties with Krew and Kor, the city blames Jak for its current woeful circumstances. When the palace is destroyed by a surprise Metal Head attack, even Ashelin cannot protect Jak as the High Council's power broker, Count Veger, forces Jak into banishment for life to the desolate Wasteland. Upon Jak being flown to the harsh island and dropped off to fend for himself, he discovers that Daxter and Pecker have discreetly followed him to his proclaimed lifetime of hell. With Daxter and Pecker bravely by his side, the three begin their next adventure as they wander the Wasteland and along the way encounter perilous situations, violent battles and devastating consequences.